PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02551.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 307aa    MW: 33456.4 Da    PI: 6.4981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02551.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-10751313999
                                   EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                       ++ W+v++   + +++ +l++GW eF  a+g+ +  fvv++++   +++l+vk+f++
  Zpz_sc02551.1.g00020.1.am.mk  75 SPFGSKLWRVEV--GRDGEGAFLGRGWPEFLAAHGIGVDWFVVLRHE--GGATLTVKAFDA 131
                                   4445699*****..999999*************************65..58889***9997 PP
2B342.21.4e-131662163584
                                   EEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                            B3  35 tltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                   t+tl++   s +sW+v ++ + k+g+y l++ W +F+++n+LkegD+++Fkl
  Zpz_sc02551.1.g00020.1.am.mk 166 TITLKTsiDSAKSWQVDVS-KEKKGSYQLGQDWCKFCQDNRLKEGDICTFKL 216
                                   56666632456*******4.666678************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.02146132IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1076134IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-878131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-978134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.21979132IPR003340B3 DNA binding domain
SMARTSM010190.0052134238IPR003340B3 DNA binding domain
CDDcd100171.05E-11147217No hitNo description
SuperFamilySSF1019364.12E-11164240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.644166238IPR003340B3 DNA binding domain
PfamPF023622.7E-11166216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-12166240IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAEHFKMLLS PPIERPVSIT PRPLTILKRR HSTPLTELNR PADPIILVLQ RVADELAGCF  60
AAADGVPALV ALVVSPFGSK LWRVEVGRDG EGAFLGRGWP EFLAAHGIGV DWFVVLRHEG  120
GATLTVKAFD ASFCIKEFRA PAEGDWSHFV AFHGISEGDI VLGPCTITLK TSIDSAKSWQ  180
VDVSKEKKGS YQLGQDWCKF CQDNRLKEGD ICTFKLFIAF QYMSAACSVL TVKTFDASCC  240
FTELSRLSSD VFHGTVSTAT ASYVDSAAMA DLPARPVTPP YAIQPVRPCH HHGALSCVDW  300
DGLLDSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02551.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-07B3 family protein