PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02573.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 162aa    MW: 18073.7 Da    PI: 10.1358
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02573.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.25.3e-13107143340
                     CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 
                                   ++YVNaKQ+++Il+RR +Rak+++e+++ + +rk   h
  Zpz_sc02573.1.g00050.1.sm.mk 107 AIYVNAKQFKGILRRRLARAKAARERRV-SMKRKVTNH 143
                                   69**************************.666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.9E-4103159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115214.791104162IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-12107144IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNLNYQEHGM GFLQGAGAAH KFTPISAAGV SYLGKQLAFH EPSAPTSFAY PAWQQDYSGC  60
FDLALGQSMA CNVDQRHDYG VCSTYGAHVM GRRKVLLQPA ITVEEPAIYV NAKQFKGILR  120
RRLARAKAAR ERRVSMKRKV TNHAAESFSS RSSCPFLHFF FH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02573.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.17e-29nuclear transcription factor Y subunit A-2
TrEMBLA0A0A9ILA92e-49A0A0A9ILA9_ARUDO; Uncharacterized protein
STRINGOPUNC07G03530.11e-30(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4719633