PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02573.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 87aa    MW: 8908.89 Da    PI: 10.7771
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02573.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.35e-132243658
                     CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
                                  +pylheSRh hAlrR+RgsgGrF
  Zpz_sc02573.1.g00060.1.sm.mk  2 QPYLHESRHLHALRRARGSGGRF 24
                                  89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115219.471127IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-10224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MQPYLHESRH LHALRRARGS GGRFLNTRNV DAVPGGGGQA PPSADAFTGF GVGDAPESTA  60
RSAMRDSVAV SGVVSAAEGG RCGALRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02573.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2749845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-12nuclear factor Y, subunit A10