PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02576.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 248aa    MW: 27013.5 Da    PI: 9.2107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02576.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-143586155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Zpz_sc02576.1.g00140.1.am.mk 35 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 86
                                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.96E-123390No hitNo description
SuperFamilySSF474594.06E-1733105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.5613485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-143598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-113586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-94091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.025155232IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
PPALAPERGK ASAPASRRRR KRPKAVKNQE EMESQRRNHI AVERNRRRQM NEYLAVLRSV  60
MPPSYAQRGD QASIVAGAIN FVKELEQTVQ SLEAQKRGAQ PFAGFFTFPQ YSTGAVASGA  120
ASDDNEGLSG GDHHQCAPRR GAADIEVAVV ESHANVKVLA PRRPRQLLRM VVALQCLGLT  180
VLHLNVTTTA DNLAFYTFSL KIEDECRLSS ADEIAAAVNE ILAKISEEDA AGQPSTLAGE  240
TSSRERVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13646RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02576.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605121e-88BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
GenBankEU9660021e-88EU966002.1 Zea mays clone 290696 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828341.11e-109transcription factor bHLH94-like
SwissprotQ9C7T45e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9FQM11e-114A0A0A9FQM1_ARUDO; Uncharacterized protein
STRINGPavir.Aa00538.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]