PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02720.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 658aa    MW: 71418.8 Da    PI: 5.1075
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02720.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.46.1e-2695202187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......................rergferspkqCkekwenln 58 
                                   rW+++e+laLi++r+em+ ++r++ lk+plWe+v++ +                       ++ g+ rs+k+Ckek+en+ 
  Zpz_sc02720.1.g00080.1.am.mk  95 RWPREETLALIRIRSEMDAAFRNAPLKAPLWEDVASEVvgvvqddkdlrarqpydtawaklAALGYVRSAKKCKEKFENVD 175
                                   8******************************************************************************** PP

                      trihelix  59 krykkikegekkrtsessstcpyfdqlea 87 
                                   k+y+++ke + +r++++s  +++f++lea
  Zpz_sc02720.1.g00080.1.am.mk 176 KYYRRTKEARAGRQDGKS--YRFFSELEA 202
                                   ************866665..******985 PP
2trihelix107.11.2e-33420505187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k+ev+aLi++r+e++e+  ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpy
  Zpz_sc02720.1.g00080.1.am.mk 420 RWPKEEVQALIRLRTEKDEQCHDTGSKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PQDSKTCPY 499
                                   8********************************************************************97.9******** PP

                      trihelix  82 fdqlea 87 
                                   f+ql+a
  Zpz_sc02720.1.g00080.1.am.mk 500 FHQLDA 505
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.992177IPR001005SANT/Myb domain
PfamPF138374.4E-1594203No hitNo description
PROSITE profilePS500905.2595175IPR017877Myb-like domain
CDDcd122031.15E-2195182No hitNo description
SMARTSM007173.0E-5417479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-5418476IPR009057Homeodomain-like
PfamPF138374.0E-22419506No hitNo description
SuperFamilySSF466893.67E-5419489IPR009057Homeodomain-like
PROSITE profilePS500907.898419477IPR017877Myb-like domain
CDDcd122036.13E-28420484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLHHHGGARF PYAAPGTTDA VQFSFPPPPT DPESFTTIPQ PPAPAETSVF AELPFAGSGS  60
GVVAASNLHE DDDTPADFGV SGTGASGASG SGSTRWPREE TLALIRIRSE MDAAFRNAPL  120
KAPLWEDVAS EVVGVVQDDK DLRARQPYDT AWAKLAALGY VRSAKKCKEK FENVDKYYRR  180
TKEARAGRQD GKSYRFFSEL EALHAAAPQQ RRQQASGQAD PQPSAPMSWT TAPAALAPPG  240
AGLPELSFSS MSGSESESDD DEFDVDGAED HGKGDGDATV CDKEMMALFE GMMRQVTEKQ  300
DAMQRVFLDT LERWEAERTA REEAWRRQEV ARMNREREQL AKERAAAASR DAALIAFLQR  360
VGGGGQAVAV PTPMPDRAPP SPRQDAANTS PLQVVSVPSK PEESWAWAGG ESSGGSTSSR  420
WPKEEVQALI RLRTEKDEQC HDTGSKGPLW EDIAAGMRRI GYNRSAKRCK EKWENINKYF  480
KKVKESNKRR PQDSKTCPYF HQLDAMYRKK RFAGRPGSGA ASEAHLSTVT ASSQTSPSQR  540
ELEGKSSNDA GKQNIIGAAN IHALPSEMAS AATILGDGAK NKKPEDTETE TNMQLQQQHE  600
FAADETDSDD MVMEGLYTDE GNDGDRMQYK TGSSGNTPAP TETAAAATSS ASTFLAVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02720.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548721e-107BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds.
GenBankBT0677671e-107BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6QGT40.0A0A3L6QGT4_PANMI; Trihelix transcription factor GTL1-like isoform X1
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-43Trihelix family protein