PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02751.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 255aa    MW: 27234.8 Da    PI: 9.7159
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02751.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-0758763957
                                  S-HHHHHHHHHHHHHHHHC CS
                      Homeobox 39 LterqVkvWFqNrRakekk 57
                                  + +++V++WFqNrR + ++
  Zpz_sc02751.1.g00020.1.am.mk 58 VRDANVFYWFQNRRSRSRR 76
                                  6789************997 PP
2Wus_type_Homeobox41.14.2e-1454774164
             Wus_type_Homeobox 41 eyGkiedkNVfyWFQNrkaRerqk 64
                                  ++G+++d+NVfyWFQNr++R+r++
  Zpz_sc02751.1.g00020.1.am.mk 54 RFGAVRDANVFYWFQNRRSRSRRR 77
                                  7*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.38E-65483IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-45682IPR009057Homeodomain-like
PfamPF000464.4E-55876IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKSPATCPSQ QHRNPRRAPT GSPKRGQLIL PNFAVLPVRT SSTLTHALTP GRPRFGAVRD  60
ANVFYWFQNR RSRSRRRARQ LQQACGAAAQ LPSAAVIHGV NDSASHYVMH GHGLARTGSV  120
PTSAPVQSAA AAAPHFFADD VDGGDDLFAI SRQMGLLPRG DDHRCGYTAN DVSAQLSYHQ  180
PTATATTSIQ VFINGVVYEV PGGGALLDLA GTFGRDAVLV HSSGEILPVN EQGILMKSLQ  240
MGECYYLVGT IIGLH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02751.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073058e-37AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence.
GenBankAP0052498e-37AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBankAP0149648e-37AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126168e-37CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683622.12e-89WUSCHEL-related homeobox 10
SwissprotA2YST12e-59WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBLA0A1E5VIR58e-95A0A1E5VIR5_9POAL; WUSCHEL-related homeobox 10
STRINGSi015065m4e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.19e-18WUSCHEL related homeobox 11