PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02770.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 143aa    MW: 16264.3 Da    PI: 9.2852
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02770.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-1195142448
                                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                     W   E+e l ++v+++G+g+Wk I +  +    gRt+ ++k++w++ +
  Zpz_sc02770.1.g00060.1.am.mkhc  95 WCLLEEETLRKGVEEYGSGNWKDILANNPdvfIGRTPVDLKDKWRNMM 142
                                     66669****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-1485143IPR009057Homeodomain-like
PROSITE profilePS5129416.40487143IPR017930Myb domain
SuperFamilySSF466893.81E-1589142IPR009057Homeodomain-like
SMARTSM007170.002991143IPR001005SANT/Myb domain
CDDcd116601.17E-1893143No hitNo description
PfamPF002495.4E-1094141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDKAHNLNAA SVNGQQATCG TAGPSSHNDV DKAPNKGAPS LMDWNPTAQT YQWEDSPDTE  60
RPQFCRPHLP SPRRMPVSPL QPPENKNKRR KARKWCLLEE ETLRKGVEEY GSGNWKDILA  120
NNPDVFIGRT PVDLKDKWRN MMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02770.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811007.11e-70uncharacterized protein LOC112888859
TrEMBLA0A0A9NEY32e-76A0A0A9NEY3_ARUDO; Uncharacterized protein
STRINGPavir.J08903.1.p1e-69(Panicum virgatum)
STRINGSi006005m4e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-17TRF-like 5