PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02787.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 128aa    MW: 14492.8 Da    PI: 11.0575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02787.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-0891127849
                                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
                             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 
                                     + ++RR+riN+++  L++l+P+      +K++ +++Le+Av+
  Zpz_sc02787.1.g00010.1.sm.mkhc  91 IAQKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVR 127
                                     679******************97.....7***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002532.2E-15754IPR001209Ribosomal protein S14
SuperFamilySSF474591.07E-783127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.50383128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-686127No hitNo description
Gene3DG3DSA:4.10.280.101.6E-691126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-591127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGHSNVWNSH PKNYGPGSRV CRVCANPHGL IRKYGLMCCR QCFRSNAKDI GFIKGETVTA  60
ATNAVAGDKR IFPIDERRNK SKNTNKKPRT IAQKRRERIN EKLRVLQQLI PNGTKVDIST  120
MLEEAVRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd2e-3315415440S ribosomal protein S14
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02787.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4579363e-69AF457936.1 Zea mays clone cho1c.pk002.j14, mRNA sequence.
GenBankDQ2451413e-69DQ245141.1 Zea mays clone 13268 mRNA sequence.
GenBankEU9545493e-69EU954549.1 Zea mays clone 1470027 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9579163e-69EU957916.1 Zea mays clone 1633015 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9624583e-69EU962458.1 Zea mays clone 242876 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9655553e-69EU965555.1 Zea mays clone 286898 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9697353e-69EU969735.1 Zea mays clone 334813 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9753293e-69EU975329.1 Zea mays clone 487665 40S ribosomal protein S29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6Q4B53e-50A0A3L6Q4B5_PANMI; Uncharacterized protein
STRINGOGLUM12G15000.24e-36(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP196223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-16bHLH family protein