PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02840.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 186aa    MW: 20613.7 Da    PI: 5.0292
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02840.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB83.33.1e-2613101694
                         NF-YB   6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                                   r +P++ v+rim+ +lP+n+ki  d+k+ +++c+sef + +t ea+   ++e r+ ++gdd++ al+ +Gf + v pl+++
  Zpz_sc02840.1.g00070.1.sm.mk  13 RRIPMTTVTRIMHCALPQNSKINTDTKDAMNQCISEFTARLTHEAARVGKEESRRIMSGDDIILALGRMGFSNCVGPLTLF 93 
                                   789****************************************************************************** PP

                         NF-YB  87 lkkyrele 94 
                                   l++y e +
  Zpz_sc02840.1.g00070.1.sm.mk  94 LQRYHESQ 101
                                   ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-2410103IPR009072Histone-fold
SuperFamilySSF471131.22E-1913103IPR009072Histone-fold
PfamPF008082.2E-141478IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAARMEAPPE DFRRIPMTTV TRIMHCALPQ NSKINTDTKD AMNQCISEFT ARLTHEAARV  60
GKEESRRIMS GDDIILALGR MGFSNCVGPL TLFLQRYHES QGIMPRGWQD ELASQELMLS  120
SQVVVEQQLP AAVPTVGVEL QLPELNLTLG LALPVPRDVT ELGPHEDVYK VWPRPAGPMP  180
LADGNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-201399692Transcription factor HapC (Eurofung)
4g92_B2e-201399692Transcription factor HapC (Eurofung)
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02840.1.g00070.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.14e-24nuclear factor Y, subunit B2