PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02840.1.g00080.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 226aa MW: 25405.3 Da PI: 6.3624

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02840.1.g00080.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	75.1	1.1e-23	44	130	7	93
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +Pi+ v+rim+ + P n+ki d+k+ +++c+ ef + +t ea+ ++e r+ ++gdd++ al+ +Gf dyv pl++ l Zpz_sc02840.1.g00080.1.sm.mk 44 KIPITAVTRIMHCAQPRNSKINADTKDAMNQCILEFTARLTHEAAWVGKEESRRMMSGDDIILALGRMGFSDYVGPLTLLL 124 68***************************************************************************** PP NF-YB 88 kkyrel 93 ++y e Zpz_sc02840.1.g00080.1.sm.mk 125 QRYCES 130 *875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	7.3E-12	44	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.1E-21	45	135	IPR009072	Histone-fold
SuperFamily	SSF47113	1.1E-17	45	130	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MERAKAQGDI GSEAKDTLVR LGVRLQLMIV TWLRDGSTIR RLHKIPITAV TRIMHCAQPR 60 NSKINADTKD AMNQCILEFT ARLTHEAAWV GKEESRRMMS GDDIILALGR MGFSDYVGPL 120 TLLLQRYCES RAIMPRGWQT ELASQEPMSS SQVVVEQQLQ AAMPTVGVEL QPPEPDLTLG 180 LAPPAPRHVT ELELHEEVYK VWPRSAGPMP QPMATNELFY VERAFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	5e-17	45	127	9	91	NF-YB
4awl_B	6e-17	45	127	10	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	6e-17	45	127	10	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02840.1.g00080.1.sm.mk

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.6	1e-20	nuclear factor Y, subunit B1