PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02840.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 252aa    MW: 27062.7 Da    PI: 6.6768
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02840.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB148.11.9e-4645139296
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdr++Pianv+r+m++ lP +akis+dak+++qecvsefisfvt+ea+d+c+ e+rkt++++d++wa+  lGf+dy++p
  Zpz_sc02840.1.g00090.1.am.mk  45 REQDRLMPIANVVRVMRRGLPPHAKISDDAKDVIQECVSEFISFVTGEANDRCHGEHRKTVTAEDVVWAMERLGFDDYLAP 125
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelege 96 
                                   +k+y+++ r+ +g+
  Zpz_sc02840.1.g00090.1.am.mk 126 IKAYVRRMRDYDGA 139
                                   *********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.1E-4342141IPR009072Histone-fold
SuperFamilySSF471131.34E-3347146IPR009072Histone-fold
PfamPF008086.4E-2351114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.1E-137896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.1E-1397115No hitNo description
PRINTSPR006152.1E-13116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMVPQSPIA NAPCPLAVEL EPAIPMEAAA ATEPPAPATE LVMIREQDRL MPIANVVRVM  60
RRGLPPHAKI SDDAKDVIQE CVSEFISFVT GEANDRCHGE HRKTVTAEDV VWAMERLGFD  120
DYLAPIKAYV RRMRDYDGAG RGGGDNAQTR VHVHHAPAPP LPMAAPHGVQ VQAPPVAFPN  180
SALAAHRYGA VPLQVQFGAA PRFRAQRNVL GGERSVAAAY HGAPTIGAEE TSSSTVEQPT  240
ADAAPRRLHY PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4644135697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02840.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880351e-100AB288035.1 Oryza sativa Japonica Group OsHAP3D mRNA for HAP3 subunit of HAP complex, complete cds.
GenBankAK1096601e-100AK109660.1 Oryza sativa Japonica Group cDNA clone:002-141-E08, full insert sequence.
GenBankAP0047911e-100AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149621e-100AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY0621831e-100AY062183.1 Oryza sativa HAP3 transcriptional-activator (LEC1A) mRNA, complete cds.
GenBankCP0126141e-100CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966908.11e-58nuclear transcription factor Y subunit B-10
TrEMBLK3Y2D41e-60K3Y2D4_SETIT; Uncharacterized protein
STRINGSi008357m2e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-45nuclear factor Y, subunit B6