PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02844.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 464aa    MW: 51219.9 Da    PI: 4.5485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02844.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS198.34.7e-61914542372
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 
                                    +lLl+ Aeav+ +d +la+a+L++l +l      +++  +++ la +f+++L++++++     y    p+e +   +s +
  Zpz_sc02844.1.g00010.1.sm.mk  91 SDLLLTGAEAVEVRDSSLASAVLSKLDHLlpdicENEANGSLHHLAYHFAQGLHHQMSG----AYTPSYPQELP---QSGV 164
                                   689*************************988875566669******************9....56555566665...7788 PP

                          GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skee 157
                                   ++a+ + +e sP+ kf+h+t+NqaIl+a+  +  vH++Df+i +G+QW++++  L+   +g  s+ +T+v   +sg s ++
  Zpz_sc02844.1.g00010.1.sm.mk 165 MSAHLMIQEFSPFAKFAHFTTNQAILDATMDDMDVHVVDFNIAEGVQWASFMSDLSR--HGDKSFHLTAVIIDDSGySDNT 243
                                   8888899************************************************98..5778999***999888889999 PP

                          GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                     +t  rL++fAe+l +pf++n+l  +     +l++++ + + ++++++     +l    +sl++ r  +  +vk+l+Pk+
  Zpz_sc02844.1.g00010.1.sm.mk 244 CCTTVLRLSEFAESLSLPFKYNFLRLHYAG--DLDDFSRNCQGSVIISCDT--TNLC--YTSLSKLRILLTGCVKKLQPKL 318
                                   99*********************9333333..668898888999***9988..4444..2456666678889********* PP

                          GRAS 239 vvvveqe.......adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310
                                   vv+ve+e       a+++++sF+e f+e l+++++lf+sl++ +   +     + vEr ++g++i++ v + g e      
  Zpz_sc02844.1.g00010.1.sm.mk 319 VVIVEEElvrmgkeASLSHASFVEFFFEGLHHFTVLFESLASCFNGGDdkVCLRLVERDVVGPKIQDFVGQHGCE------ 393
                                   ******96554444555666********************888766663466789******************98...... PP

                          GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                                   tl+    +    GF p +ls  + +qa+ll+  ++ + + v +e+g l l+Wk+rpLvsvS+
  Zpz_sc02844.1.g00010.1.sm.mk 394 TLKAAAGANVLEGFMPCELSACNIAQARLLVGLFS-RSFGVANEKGRLQLCWKSRPLVSVSV 454
                                   455555556678***********************.66***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.15564437IPR005202Transcription factor GRAS
PfamPF035141.6E-5891454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MRQLGYEVGT DSLWSPHVTL HDNATAADLS PIQLDDREFV DDTVGIDSSV FHEQYCFDAD  60
AFANCDVRFL SEEGNNLAAI QEELMEDSSL SDLLLTGAEA VEVRDSSLAS AVLSKLDHLL  120
PDICENEANG SLHHLAYHFA QGLHHQMSGA YTPSYPQELP QSGVMSAHLM IQEFSPFAKF  180
AHFTTNQAIL DATMDDMDVH VVDFNIAEGV QWASFMSDLS RHGDKSFHLT AVIIDDSGYS  240
DNTCCTTVLR LSEFAESLSL PFKYNFLRLH YAGDLDDFSR NCQGSVIISC DTTNLCYTSL  300
SKLRILLTGC VKKLQPKLVV IVEEELVRMG KEASLSHASF VEFFFEGLHH FTVLFESLAS  360
CFNGGDDKVC LRLVERDVVG PKIQDFVGQH GCETLKAAAG ANVLEGFMPC ELSACNIAQA  420
RLLVGLFSRS FGVANEKGRL QLCWKSRPLV SVSVYTPVPK ENIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2713145754379Protein SCARECROW
5b3h_D1e-2713145754379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02844.1.g00010.1.sm.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317590.10.0uncharacterized protein LOC8070665
RefseqXP_025826871.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A1Z5RGS20.0A0A1Z5RGS2_SORBI; Uncharacterized protein
TrEMBLA0A2S3ICH50.0A0A2S3ICH5_9POAL; Uncharacterized protein
TrEMBLA0A2T7CK870.0A0A2T7CK87_9POAL; Uncharacterized protein
STRINGSb05g003820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-35GRAS family protein