PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02877.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 398aa    MW: 44651.2 Da    PI: 9.0305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02877.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.62.9e-29197291189
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+k ltpsdv+k++rlv+pk++ae++      g   e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L+
  Zpz_sc02877.1.g00030.1.am.mk 197 FEKPLTPSDVGKLNRLVIPKQHAERYfplgggGDAGEKGLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLD 277
                                   99****************************98444557889**************************************** PP

                                   TT-EEEEEE-SSSE CS
                            B3  76 egDfvvFkldgrse 89 
                                   +gD+v F++++   
  Zpz_sc02877.1.g00030.1.am.mk 278 AGDVVRFERVRGGL 291
                                   ********776444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-38191300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-30195299IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-26196286No hitNo description
PfamPF023623.9E-26197289IPR003340B3 DNA binding domain
SMARTSM010198.6E-25197300IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817197300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MNVSAFCDDV TTITLAWGNL ELEPRRGEAG WRDGHTGNAM VTRSSEPCEG APVDKRSEQS  60
DTADFIPLSL QNLIRSEGQT ERIVWWCWCP PSAGGCRRIQ RTGDSSVVLL LDQGQVAVLR  120
RWCESGSAVH QWDRAGRALD GVESEKEEIS RSSARPRTIM AMHPALSHGH PPAWPWGMAM  180
YTNLHYHHHQ YEREQLFEKP LTPSDVGKLN RLVIPKQHAE RYFPLGGGGD AGEKGLLLSF  240
EDEAGKPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVRFERVRGG LGHVGVVVPG  300
QPRQLLRLPQ RHATRRLCRP AVADAIFVDN RRRDDGDQEQ RRGFSAVEEA QAVRREPRLR  360
PGAGAGARDA DGNVRIHAPA EPLHGSFRSA KLLVSSPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-441922923101B3 domain-containing transcription factor NGA1
5os9_B5e-441922923101B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02877.1.g00030.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287581e-122AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-122AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-122CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8BDK18e-84M8BDK1_AEGTA; B3 domain-containing protein
STRINGEMT230051e-84(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.26e-43B3 family protein