PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02887.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 463aa    MW: 50449.9 Da    PI: 10.454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02887.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19288338255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +  k +r++lg+++ta eAa+a+++a+ +l+g
  Zpz_sc02887.1.g00070.1.am.mk 288 RYRGVRQRP-WGKYAAEIRDPAQ--KGARVWLGTYDTAVEAARAYDRAAFRLRG 338
                                   7********.**********944..44*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-31288347IPR001471AP2/ERF domain
PROSITE profilePS5103224.619288346IPR001471AP2/ERF domain
CDDcd000182.33E-29288347No hitNo description
SMARTSM003808.9E-38288352IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22288347IPR016177DNA-binding domain
PfamPF008476.4E-13288338IPR001471AP2/ERF domain
PRINTSPR003671.9E-13289300IPR001471AP2/ERF domain
PRINTSPR003671.9E-13328348IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MTTGQRPRRE AVWMPPDRLG YSGQGCSGVD GGRKPRVVAL AVTERSKFRQ VHKWSPTIHV  60
QPFPSPSRSM RPDQGFFVLL ETGGTRSPTL PRRPCSTENE RLAEWLRWTA MQRPTTPGRL  120
ASDVSAATSL RVPGFVRRTR KPPRSTVMSP YLLAAASYIA VGGRVPRPLF NADARNAAPA  180
GPCSSPPPTP QRQVSSSHLK HLDLIRAHLL EDGHDVAAGA VSSDSDGSTA SPSPSPPGRR  240
QVPALSVTLP PRLATVVVHQ QWAAAPSSQV RHQQEQEHGC YEEDDFRRYR GVRQRPWGKY  300
AAEIRDPAQK GARVWLGTYD TAVEAARAYD RAAFRLRGSK AILNFPNEFA FGAAARWAAP  360
SAASLNNSYA AAAGNKRTRS PEQSLQWEAA ESLRDVKKER VQEPAVSCDY WAAGVAVAPA  420
PASGGADFFW EEVEELKGTL CTLPLLSPLS PHPHVALPHL SVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26287346463ATERF1
3gcc_A2e-26287346463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02887.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798901e-80AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBankAC0847631e-80AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149661e-80AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY3418261e-80AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds.
GenBankCP0126181e-80CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796155.13e-84ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6SDV46e-91A0A3L6SDV4_PANMI; Uncharacterized protein
STRINGPavir.Ib02259.1.p2e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-21ERF family protein