PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02904.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 606aa    MW: 66550.3 Da    PI: 10.1658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02904.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.41.4e-323595001128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+t
  Zpz_sc02904.1.g00020.1.am.mk 359 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTT 434
                                   799************.99****999985665442...133334666646**********.555666688************ PP

                           NAM  71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk+r+++       + +W++tgk+++vl+ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zpz_sc02904.1.g00020.1.am.mk 435 GTRKRRKVHsededggETRWHKTGKTRPVLA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 500
                                   ******8444555544778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-37350519IPR003441NAC domain
PROSITE profilePS5100532.812359519IPR003441NAC domain
PfamPF023652.5E-14360500IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MSSFRWPANR SSTERFLNPE VGRGTPSFSD RCVLSVRSWS DRSRPPQAPL PLDPGLPSYA  60
IDDQISQAIE RNLITAVHGG MGARSWPGLF PLRGERERER LAISSSSSWS YFPCKTLHGD  120
RVSKAPRSSS LRPRASMTSP QKLSASAIDR YSCSAATLST SPSPAGRTWL AHGLRGPRAI  180
SKVDDGRRIR TPALLLTVTS ELAAGRLLPS LFPPSPSFSF LDPSRRPPLL FVVPSPISVS  240
LEPKPSRRSS RLPAAFFFQL LASELARSRH LLSSYCLGYS ETTYIVAISE EIDRSIDRMT  300
WCNGFNDVRA AVDNPAGVVA AAGKKGAASL AVRVKMCPSC GHRAQFAQET TTIQDLPGLP  360
AGVKFDPTDQ ELLEHLEGKA RPESRKLHPL VDEFIPTIEG EDGICYTHPE KLPGVSKDGL  420
VRHFFHRPSK AYTTGTRKRR KVHSEDEDGG ETRWHKTGKT RPVLANGRPR GYKKILVLYT  480
NYGKQRKPEK TNWVMHQYHL GSDDEERDGE LVVSKVFFQT QPRQCGSTAA AAAAKDPIGD  540
ATKNNPAVNG RELAAHTVFS EPNVAEYYNP ATIGYGHGVP NNRAQVVATH FMPNFAVHAG  600
RASFAP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02904.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655440.0BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds.
GenBankJX4285320.0JX428532.1 Zea mays subsp. mays clone pUT3132 NAC87 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-151NAC domain-containing protein 73
TrEMBLA0A109PNR31e-163A0A109PNR3_BAMEM; NAC1
STRINGPavir.J04559.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-116NAC domain containing protein 73