PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02913.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 1087aa    MW: 117499 Da    PI: 7.3706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02913.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.11.9e-1114518012374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 
                                    +lLl+cAe v++++l  a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+ + +  +  s+ +aa+
  Zpz_sc02913.1.g00030.1.am.mk 451 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPAASPAAARlNSRIAAAF 531
                                   579************************************************************776666555488888999 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   ++f+ +sP++kfsh+taNqaI ea+e+e+r          GlQWp L++ LasRp+gpp++++Tg+g+    s e le+tg
  Zpz_sc02913.1.g00030.1.am.mk 532 QVFNGISPFVKFSHFTANQAIQEAFEREDR----------GLQWPGLFHILASRPGGPPRVKLTGLGA----SMEVLEATG 598
                                   ****************************86..........****************************....********* PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                   +rL++fA +lg+pfef + va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++ve
  Zpz_sc02913.1.g00030.1.am.mk 599 KRLSDFALTLGLPFEFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVE 672
                                   ******************.7*************************9..999999999999....***************** PP

                          GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                   q+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF
  Zpz_sc02913.1.g00030.1.am.mk 673 QDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGF 751
                                   *****.899****************************************************988887.************* PP

                          GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   ++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Zpz_sc02913.1.g00030.1.am.mk 752 RAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 801
                                   *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.433424781IPR005202Transcription factor GRAS
PfamPF035146.6E-109451801IPR005202Transcription factor GRAS
PfamPF046783.1E-509181076IPR006769Coiled-coil domain containing protein 109, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 1087 aa     Download sequence    Send to blast
MGVSTKRAAT GEKCDGCTGL HGGVRVAKKA RPFCELGERE RGHTCTSRHH RKAGVPIHDA  60
SSQGLFLFLQ PCSLESEATP HSSVVNGSDR MVRPSLLHGQ LRPNLNSKAT SHSLITPSST  120
PPPPRSAACS PWRLQMGSSS LLLFPSSSSA ASASPSYSSH GTTAITSASQ YSLLPPLPET  180
SSSSSAQQDH QLLLHYLHLD DHHHHQQLAM VRKRPAPADM DLPPPPRRHV TGDLSDVTAA  240
AGAPQPPSSA SAQLPALPTQ LQLPAFGQQH AGEVDVAPAQ VVQQPGDVTT ASTAALVDGI  300
IRDIIGSSGA AVSVTQLIQN VREIIQPCNP GLASLLELRL RSLLAADPAA LPPPPHQHPT  360
LIHHHHHHTA PPTAAPGVAA LPPPHHPPPA LPEPTQCQEE PNPAPQSPKP PTAEETAAAA  420
AAAAAAAAAA AKERKEEQLR KQRDEEGLHL LTLLLQCAES VNADNLDDAH QTLLEIAELA  480
TPFGTSTQRV AAYFAEAMSA RLVSSCLGLY APLPAASPAA ARLNSRIAAA FQVFNGISPF  540
VKFSHFTANQ AIQEAFERED RGLQWPGLFH ILASRPGGPP RVKLTGLGAS MEVLEATGKR  600
LSDFALTLGL PFEFCAVAEK AGNVDPEKLG VTRREAVAVH WLHHSLYDVT GSDSNTLWLI  660
QRLAPKVVTM VEQDLSHSGS FLARFVEAIH YYSALFDSLD ASYGEDSPER HVVEQQLLSR  720
EIRNVLAVGG PARSGDVKFG SWREKLAQSG FRAASLAGSA AAQASLLLGM FPSDGYTLVE  780
ENGALKLGWK DLCLLTASAW RPIQPAGRPT TMWRAAASRL LRPRHRPAST STSTSTAATA  840
LLLHARLFSP PAPSPRGRPA QAEASELEVT PAEARRLLRL VGVEALKRRL RDGPDEVLGY  900
AELLDACVEA GAARTLAEAE ALARALDDAG VVLLFRDKAY LHPEKVVDLV RSAMPLTLEP  960
EKNDPRKEEF KQLQERKEEI DKLAHKQVRR ILWSGLGFFM CQVGLFFRLT FWEFSWDVME  1020
PVAFFTTASG LLVGYAYFLI TSRDPTYQDF MERLFSSRQR KLCAMHKFDM ERYLELQKQC  1080
KCPLEGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04348023380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02913.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636820.0BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807416.10.0protein SCARECROW-like
SwissprotA2ZAX50.0SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A2T7E4L00.0A0A2T7E4L0_9POAL; Uncharacterized protein
STRINGOS11T0124300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-179GRAS family protein