PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03046.1.g00050.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 192aa MW: 21241 Da PI: 5.0195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03046.1.g00050.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	68	107	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq Zpz_sc03046.1.g00050.1.sm.mkhc 68 LRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 107 6****************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.275	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-9	63	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-13	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	68	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.34E-11	69	111	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-14	70	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGNYQLHIWG VYMENSSGSY FSSWPDSKEF FRGRLPSFAT IQETNLPGGD FKTQKQKVLT 60 ATSYLLQLRR EKISDRMKNL QDLVPNSNKA DKASMLDEII DYVKFLQLQV KGCCDQPLSA 120 PTAAHGLSDA QDSEDSEDTL AFEQEVVKLM ETSVTSAMQY LQNKGLCLMP VALASSISNE 180 KGTAGAAVPA QR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03046.1.g00050.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ468654	2e-41	DQ468654.1 Zea mays bHLH transcription factor PTF1 mRNA, complete cds.
GenBank	EU957857	2e-41	EU957857.1 Zea mays clone 1627284 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812392.1	9e-61	transcription factor bHLH110-like
Swissprot	Q9ZUG9	4e-34	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2S3HL11	2e-59	A0A2S3HL11_9POAL; Uncharacterized protein
STRING	Pavir.Db01966.1.p	5e-58	(Panicum virgatum)
STRING	Pavir.J15280.1.p	8e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-36	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]