PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03067.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 141aa    MW: 15430.8 Da    PI: 10.2537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03067.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-1084110127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++ C +++rtG C +G+rC+++H++
  Zpz_sc03067.1.g00040.1.am.mk  84 PGEADCGYYLRTGGCGFGERCRYNHPR 110
                                   57899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-483110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.26383111IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-885110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-687111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-489110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVPAEPRAPA LALKVLLLRF LVSPRSPAGR TAAGSRRVWG LTRRRANAWL VGWFVAGPMW  60
RLGLDGGGEG GQEVGDPARL PERPGEADCG YYLRTGGCGF GERCRYNHPR DRGGTEVNER  120
CVPAFILPPL PNPRNLEPFL I
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03067.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-37HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7532222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-14C3H family protein