PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03068.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 206aa    MW: 21054.5 Da    PI: 7.2668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03068.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2053102356
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                     y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g+
  Zpz_sc03068.1.g00010.1.sm.mkhc  53 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 102
                                     9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-3152109IPR001471AP2/ERF domain
SMARTSM003809.7E-3452115IPR001471AP2/ERF domain
PfamPF008477.8E-1452101IPR001471AP2/ERF domain
PROSITE profilePS5103224.7952109IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2252110IPR016177DNA-binding domain
PRINTSPR003671.7E-105364IPR001471AP2/ERF domain
CDDcd000189.72E-2853111No hitNo description
PRINTSPR003671.7E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MCGGAIIADF VPAGARRPAG SSTTFSASSN ISGEDVEPTP ATRLPAPGRK TAYRGIRRRP  60
WGRWAAEIRD PRKGARVWLG TYATPEDAAR AYDVAAREIR GAKAKLNFPP AMGTAGGGGS  120
ASGGKKRRKV AAGPAAAEES SGSSPAATIV VAAKAPADGG VPGGGGEETL RECMSGLEAF  180
LGLEDGAEEE GNHDVEAWES VDLMFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20531171580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03068.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560721e-76EU956072.1 Zea mays clone 1556883 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962330.11e-78ethylene-responsive transcription factor ERF071
TrEMBLA0A0A9P8L81e-84A0A0A9P8L8_ARUDO; Uncharacterized protein
STRINGSi023329m4e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-31ERF family protein