PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03114.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 648aa    MW: 69496.6 Da    PI: 6.1473
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03114.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.79.6e-972436473374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl++s++++ ++l++ ++++ +s +++  ++l
  Zpz_sc03114.1.g00070.1.am.mk 243 QLLLECARAVAARDSQRVQQLMWMLNELASPYGDLEQKLASYFLQGLFARLTSSGPRTLRTLAAASDRN-TSFDSTRRTTL 322
                                   79************************************************************9998874.44444444455 PP

                          GRAS  84 .fsevsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.. 153
                                    f+e+sP+  f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++  
  Zpz_sc03114.1.g00070.1.am.mk 323 rFQELSPWSSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSap 403
                                   6*********************987766667778999************************889***********988889 PP

                          GRAS 154 ...skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdev 227
                                       ++ ++e+g+r++kfA+ +gvpf+f+++++  +l++l+l++L+++      alaVn++ +l  ++  ++     rd++
  Zpz_sc03114.1.g00070.1.am.mk 404 taaVQRVMREIGQRMEKFARLMGVPFSFQAVHHAgDLAELDLDALDLRDggaTTALAVNCINSLRGVV--PGGALR-RDAF 481
                                   999999************************97767**************888889************9..444444.7*** PP

                          GRAS 228 LklvkslsPkvvvvveqeadh.nse.............sFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                      +++l+P+vv+vve+ead+   +              Fl+ f+e l+++sa +dsle+++p++s+er  +Er+  gr i
  Zpz_sc03114.1.g00070.1.am.mk 482 AASLRRLKPRVVTVVEEEADLvA-SdgassaeggdseaAFLKVFSEGLRFFSAYMDSLEESFPKTSNERLALERA-AGRVI 560
                                   *******************9954.447999*********************************************.***** PP

                          GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgWkdrpL 367
                                   v++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++llr++  +g+++ e          + ++l Wk++p+
  Zpz_sc03114.1.g00070.1.am.mk 561 VDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGWSMREAsiddsaagAAGVFLAWKEQPV 640
                                   **************************************************9.888888666777777677788******** PP

                          GRAS 368 vsvSaWr 374
                                   v++SaWr
  Zpz_sc03114.1.g00070.1.am.mk 641 VWASAWR 647
                                   ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.944215620IPR005202Transcription factor GRAS
PfamPF035143.3E-94243647IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MDTLFRLVSL QATEQQQQSP SYNSRSTTSS GSWSSSHQTN ASYNYYYHST SSGGGGGGQY  60
YYGQHRHQQY YLEPYHEECG NAHHLYMDED FSSSSSSRQH FHSHGGTVQP PTSSAATPTA  120
PTPPLSTSST AAXXXXTSKC GNAHHLYMDE DFSSSSSSRQ HFHSHGGTVQ PPTSSAATPT  180
APTPPLSTSS TAAGAAHALF EAADLSYPPD LNLDFSSPAS SSGGGGASSA AVGGGAGGRW  240
GSQLLLECAR AVAARDSQRV QQLMWMLNEL ASPYGDLEQK LASYFLQGLF ARLTSSGPRT  300
LRTLAAASDR NTSFDSTRRT TLRFQELSPW SSFGHVAANG AILESFLEAA AASSEPQRFH  360
ILDLSNTFCT QWPTLLEALA TRSADDTPHL SITTVVSAAP SAPTAAVQRV MREIGQRMEK  420
FARLMGVPFS FQAVHHAGDL AELDLDALDL RDGGATTALA VNCINSLRGV VPGGALRRDA  480
FAASLRRLKP RVVTVVEEEA DLVASDGASS AEGGDSEAAF LKVFSEGLRF FSAYMDSLEE  540
SFPKTSNERL ALERAAGRVI VDLVSCPASE SMERRETAAS WARRMRSAGF SPVAFSEDVA  600
DDVRSLLRRY REGWSMREAS IDDSAAGAAG VFLAWKEQPV VWASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-16123664882474Protein SHORT-ROOT
5b3h_B1e-16123664828420Protein SHORT-ROOT
5b3h_E1e-16123664828420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03114.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A2X0S3390.0A0A2X0S339_WHEAT; Uncharacterized protein
TrEMBLA0A3B6AW450.0A0A3B6AW45_WHEAT; Uncharacterized protein
TrEMBLA0A446KTC90.0A0A446KTC9_TRITD; Uncharacterized protein
TrEMBLA0A453B6Q80.0A0A453B6Q8_AEGTS; Uncharacterized protein
STRINGTraes_2BS_736EF207B1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-135GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]