PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03117.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 378aa    MW: 40912.4 Da    PI: 7.251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03117.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51121511129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGfrFhPtdee+v+ yL +k  + +    ++i+ v+++++ePwdLp+k+k +ekewyfF+++d ky+tg+r+nrat+
  Zpz_sc03117.1.g00050.1.sm.mkhc  12 LPPGFRFHPTDEEVVTSYLVPKSLNPTSFNPRAIAVVNLNRCEPWDLPSKAKMGEKEWYFFCQKDMKYPTGTRTNRATE 90 
                                     79********************99988666688***************99999************************** PP

                             NAM  80 sgyWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     +gyWkatgkd+e+++            +++l+g+kktLvfy+grap+g+kt+Wvmhe+rle
  Zpz_sc03117.1.g00050.1.sm.mkhc  91 KGYWKATGKDREIFKPgaspgdgggrrDDQLIGTKKTLVFYTGRAPRGTKTNWVMHEFRLE 151
                                     ***************9888888877766667***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-589176IPR003441NAC domain
PROSITE profilePS5100555.64212176IPR003441NAC domain
PfamPF023658.1E-2713150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVDQEEQGDP PLPPGFRFHP TDEEVVTSYL VPKSLNPTSF NPRAIAVVNL NRCEPWDLPS  60
KAKMGEKEWY FFCQKDMKYP TGTRTNRATE KGYWKATGKD REIFKPGASP GDGGGRRDDQ  120
LIGTKKTLVF YTGRAPRGTK TNWVMHEFRL EGAYRNHPNL RLSPKDEWVV CKVFHKSNGE  180
EDKKAAAAAV EDFAAGTPTV SSISVDATGA VDGGDEFLDS MFFDPYFDYS TGTFPADNHA  240
ATMMNDVGGF FGPPYDAFDD DRTSRNPLHQ AAAVSSATVP LVPPSSSGSY RSSWNTVPSH  300
YATGSSSYNL HDQAMMARAL GGAGFPNFAG GGGFPSYSVP GISQQNSLRR RGYATGRLAS  360
SAAAAANITG QAAKNLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-481218117170NO APICAL MERISTEM PROTEIN
1ut4_B8e-481218117170NO APICAL MERISTEM PROTEIN
1ut7_A8e-481218117170NO APICAL MERISTEM PROTEIN
1ut7_B8e-481218117170NO APICAL MERISTEM PROTEIN
3swm_A1e-471218120173NAC domain-containing protein 19
3swm_B1e-471218120173NAC domain-containing protein 19
3swm_C1e-471218120173NAC domain-containing protein 19
3swm_D1e-471218120173NAC domain-containing protein 19
3swp_A1e-471218120173NAC domain-containing protein 19
3swp_B1e-471218120173NAC domain-containing protein 19
3swp_C1e-471218120173NAC domain-containing protein 19
3swp_D1e-471218120173NAC domain-containing protein 19
4dul_A8e-481218117170NAC domain-containing protein 19
4dul_B8e-481218117170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03117.1.g00050.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-118NAC domain-containing protein 77
SwissprotQ5CD178e-97NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-117K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-75Arabidopsis NAC domain containing protein 87