PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03130.1.g00080.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 246aa MW: 27160.7 Da PI: 11.4969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03130.1.g00080.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.4e-05	213	237	5	29
HHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 5 hnerErrRRdriNsafeeLrellPk 29 h +rEr+RR+++ ++++ L l+ Zpz_sc03130.1.g00080.1.am.mk 213 HMMRERQRREKLSQSYADLYALVAA 237 889****************998866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.33E-5	203	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRSRKRKTQR VVVRDFSTGP PTRNLRPGPS HSLIRRVRHL TPSLQARTSS VRHRQRLPFP 60 NYAPFDHVTV SPNTNTGAYL NPRPSASGET SRSSLRARRS TVGMDSYYAG FGFNDEIPCF 120 YPHGAAPASP ELPFGFDAVS PFVEPPGAPV LQAGSEVRGY GSAAGPEVIT GGAPQMEMMD 180 AMGAMRADRD QCQTRGEGRR PPGTVESSRG FRHMMRERQR REKLSQSYAD LYALVAARSK 240 VSLLTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	7	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03130.1.g00080.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365903	2e-34	AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678746.1	1e-30	transcription factor BHLH148-like isoform X2
TrEMBL	A0A368SEV0	4e-30	A0A368SEV0_SETIT; Uncharacterized protein
STRING	Si036716m	3e-30	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50