PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03133.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 293aa    MW: 31754.2 Da    PI: 5.5564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03133.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.93e-21109170259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                                     +Dgy WrKYGqK ++++ fpr Y+rC+++   gCp+ k+v+ rs+ dp   +++Y +eH+++
  Zpz_sc03133.1.g00050.1.sm.mkhc 109 SDGYLWRKYGQKRITNTSFPRCYFRCSYHrerGCPASKQVQqRSHGDPPQYDVVYVNEHTCD 170
                                     7***************************99999*******737889**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-2394171IPR003657WRKY domain
SuperFamilySSF1182902.35E-21103171IPR003657WRKY domain
SMARTSM007746.3E-31108171IPR003657WRKY domain
PROSITE profilePS5081117.385109172IPR003657WRKY domain
PfamPF031066.2E-23110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQTHSRFSVG SSPPADEHEA VIRELTRGHE LTAQLQAEAL RALRGQGQAE DTAKFILQEV  60
SCAFAICLAI MSSPAHAPPP TEPGAPATRR PSRDENVPRR EIVTCAPHSD GYLWRKYGQK  120
RITNTSFPRC YFRCSYHRER GCPASKQVQQ RSHGDPPQYD VVYVNEHTCD TAAWEPEVAA  180
SPAAAGATSP LLDLPGLLAR QRRGVQEEQE RQALVSSLAI VLGAHSPAGS STGVAFGQEQ  240
QQQQHGASAD PSSRGGQLPQ LDVDAELDVM DYDVTGALYI GDSYGLPDEG LPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141101691068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03133.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458684.12e-96probable WRKY transcription factor 64
TrEMBLC5XNA24e-95C5XNA2_SORBI; Uncharacterized protein
STRINGSb03g038200.17e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-17WRKY DNA-binding protein 54