PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03137.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 193aa    MW: 20230.1 Da    PI: 8.8488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03137.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-054163123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++C + F++   L  H+++H
  Zpz_sc03137.1.g00060.1.sm.mk 41 YTCGYCRREFPSAQALGGHMNVH 63
                                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-54068No hitNo description
PROSITE profilePS5015710.8244168IPR007087Zinc finger, C2H2
PfamPF139123.0E-64164IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MERDHGRGLK QQPATAAWTP SNICLNPCFS WPVPPPSLSS YTCGYCRREF PSAQALGGHM  60
NVHRRDRARL RQCCSAFAPS PNLIAAHHHR WAAAAPRPPL PNLNLLPPHC TNAATAEPVV  120
YSFFSATVSA AAAPAARKAA VGVSLDLGIV GGVCNRGGGA AEEGGLDLEL RLGRCTLGPS  180
GFHGTAHAGL IVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03137.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591935e-47EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.29e-44transcriptional regulator SUPERMAN
TrEMBLA0A1E5W4I16e-53A0A1E5W4I1_9POAL; Uncharacterized protein
STRINGPavir.J31403.1.p1e-50(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-15zinc-finger protein 10