PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03157.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 170aa    MW: 18084.2 Da    PI: 8.0755
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03157.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294365123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  + C++C++ F ++  L  H++ H
  Zpz_sc03157.1.g00020.1.am.mk 43 FACNYCHRKFYSSQALGGHQNGH 65
                                  78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.07E-64070No hitNo description
PROSITE profilePS5015710.5754370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MERNEPSSQA PGVNLDLRLD VSPRRRSAPT TAPLAVDTRG EAFACNYCHR KFYSSQALGG  60
HQNGHKLERT LAKRSRDIAA AGAPPPPVPR RSATTLVHAA ATEYGAGGEF WTTTLPFRAA  120
GGAPEEYVAV TMTPPPRIDE VGGWAAAGDG GCGRLDYARN GEEIDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03157.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0868803e-48BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds.
GenBankBT0869173e-48BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds.
GenBankBT0871603e-48BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds.
GenBankEU9605223e-48EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804127.11e-40zinc finger protein 10-like
TrEMBLA0A0A9GP561e-44A0A0A9GP56_ARUDO; Uncharacterized protein
STRINGPavir.Ba01492.1.p3e-33(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.17e-18zinc finger protein 2