PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03157.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 353aa MW: 38714.7 Da PI: 5.4264

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03157.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.9	1.1e-12	23	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikege 68 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + Zpz_sc03157.1.g00040.1.sm.mk 23 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWIDIASEVsaycaddtaatgkPGGNSAKTPNQCKNKIESMKKRYRAESAAV 103 5****************************99999999999***966666799*************998766 PP trihelix 69 kkr.tsessstcpyfdqle 86 + + + ++++f +++ Zpz_sc03157.1.g00040.1.sm.mk 104 ARAgPAAAGPSWRFFARMD 122 66536778889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-13	21	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDGLAPDADA APLAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWIDIASEV 60 SAYCADDTAA TGKPGGNSAK TPNQCKNKIE SMKKRYRAES AAVARAGPAA AGPSWRFFAR 120 MDGLLKGPAG CSGQAQQVEL GNSIDLQAPA KAEVEAEPCF SAQLPDPGPG AFADLMNIDA 180 NGSVPEKADK VDNSVHKEIR TADSDANVNS PRSKVANEDA DEEDKLWDMP KKRKSTEFAI 240 AKSIELLASS FLKVEHARME MYRETERMRI EAEIKKGEME LKRTEIMAKT HLQIAKLFAK 300 RLKEGGGRTG GSSSVTAEVD TLTKKELEEW RLRQRDMDET SSAPTEWCCV VLN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDGLAPDADA APLAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWIDIASEV  60
SAYCADDTAA TGKPGGNSAK TPNQCKNKIE SMKKRYRAES AAVARAGPAA AGPSWRFFAR  120
MDGLLKGPAG CSGQAQQVEL GNSIDLQAPA KAEVEAEPCF SAQLPDPGPG AFADLMNIDA  180
NGSVPEKADK VDNSVHKEIR TADSDANVNS PRSKVANEDA DEEDKLWDMP KKRKSTEFAI  240
AKSIELLASS FLKVEHARME MYRETERMRI EAEIKKGEME LKRTEIMAKT HLQIAKLFAK  300
RLKEGGGRTG GSSSVTAEVD TLTKKELEEW RLRQRDMDET SSAPTEWCCV VLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03157.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	1e-98	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	1e-98	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	1e-98	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	1e-98	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	1e-98	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	1e-172	trihelix transcription factor ASIL1-like
TrEMBL	A0A0A9E152	1e-179	A0A0A9E152_ARUDO; Uncharacterized protein
STRING	Pavir.Ba01421.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	4e-33	sequence-specific DNA binding transcription factors