PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03170.1.g00050.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 307aa MW: 32792.5 Da PI: 10.639

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03170.1.g00050.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	170	197	1	24
--S---SGGGGTS....--TTTTT-SS- CS zf-CCCH 1 yktelCrffartG....tCkyGdrCkFa 24 +kt+lC++f+r G C++G++C++a Zpz_sc03170.1.g00050.1.am.mk 170 WKTSLCSYFRRRGagaeGCSHGESCRYA 197 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.1E-10	165	206	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.08	169	201	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.9E-5	170	197	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAGSKVAAVG SGIGGGRSSS LGCRAVKACR CCCRHAVRCG IGTGLRATPP TRLSDQCSAH 60 ARQPVSPIWQ AARKRQVMWC GGWTGNRRRV PGGSSERWSL GLCPRSLVRC RQAVAGESQV 120 QGRSSQMANV ERFDRKVRRA LPVPETVTLT SVILPVGSVV ADGGARHPMW KTSLCSYFRR 180 RGAGAEGCSH GESCRYARTE EELRPRPDGT WDTTSDRAKK LRKVTLDEQS LNKCLVGLPQ 240 VVDGRQAQEG LPPRSGKCHF AAGFIRLLPP FDTADATSAS VVRPPTHQPP SMHCLAAAGV 300 EAGAGDA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03170.1.g00050.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP56019	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	5e-16	C3H family protein