PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03192.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 383aa    MW: 39813.8 Da    PI: 11.2049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03192.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00033323501230
                                   HHHHHHHHHHHHHCTSCCC CS
                           HLH  12 RRdriNsafeeLrellPka 30 
                                   RR++iN ++e L+el+P +
  Zpz_sc03192.1.g00040.1.am.mk 332 RREKINARMELLKELVPGC 350
                                   9****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012173.2E-10116128No hitNo description
PRINTSPR012173.2E-10132148No hitNo description
PRINTSPR012173.2E-10203220No hitNo description
PRINTSPR012173.2E-10238263No hitNo description
CDDcd000830.00184310350No hitNo description
Gene3DG3DSA:4.10.280.105.7E-4313351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
LEILAGIVVK PRCKRVGVTI LFVEIIAHWV GAPIGSWQGS LKAASPVTAV HHSPVAGKGR  60
APPRPVKKVE QHWPFTFFPS LLRPSLSSLT RAASKRKRGT PPHPAPRGFY KYRHCLPPPP  120
PPSPSPTSQT QPVPASAAPM RHTSPPPPQE FPVSGAEIQA LIPASAAGPS FSSTTTASAA  180
GGGGTRASFT ALLGLPTSQA MELLLPRVAP PAPAPAAAFP TNPHLVDRAA HFSAFASPAP  240
SSPSPITTPP PPPPPPAPSA TNAKRKADPA DRSSKGKAAK KGKTAVDENK PAGGDGEDEK  300
PAYVHVRARR GQATDSHSLA ERVSSPPLLF ARREKINARM ELLKELVPGC MHLASPGEGM  360
GFASRLWLSG QNVAAALKVA GDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03192.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407292e-47BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347160.12e-54uncharacterized protein LOC100273300
TrEMBLA0A1D6P4V35e-53A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G378653_P021e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7293122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-17bHLH family protein