PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03232.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 479aa    MW: 51632.2 Da    PI: 6.3445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03232.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-1098123126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     ++++ C+++ ++GtC++G +CkF+H+
  Zpz_sc03232.1.g00050.1.sm.mkhc  98 PGEPDCNYYVKFGTCRFGTKCKFNHP 123
                                     5789*********************8 PP
2zf-CCCH192.4e-06247265422
                                     ---SGGGGTS--TTTTT-S CS
                         zf-CCCH   4 elCrffartGtCkyGdrCk 22 
                                     e+C+++a  G Ck+G  Ck
  Zpz_sc03232.1.g00050.1.sm.mkhc 247 EECKYYATPGGCKFGKACK 265
                                     79****************9 PP
3zf-CCCH33.95.5e-11293317226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     ++++C f++rtG Cky  +CkF+H+
  Zpz_sc03232.1.g00050.1.sm.mkhc 293 GEKECLFYMRTGSCKYSINCKFHHP 317
                                     7899********************9 PP
4zf-CCCH24.74.1e-08429454227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++ C ++ r+G CkyG+ C F+H++
  Zpz_sc03232.1.g00050.1.sm.mkhc 429 DRPVCTYYGRFGVCKYGPACMFNHPF 454
                                     689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-597124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.82197125IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-799123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5102125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.629243271IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049244270IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526291319IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8293317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5294318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404427455IPR000571Zinc finger, CCCH-type
SMARTSM003560.002428454IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5429454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5430454IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MADADAHPPL PGGDAASSPI ASISPSYSAA AAAAIEEQLA GLGLTVAGGE AAFEPSGWDD  60
GPVPVVAGDD EVVPGEKVQA AVATSPAADA RVRFPRRPGE PDCNYYVKFG TCRFGTKCKF  120
NHPARKKCRV KGSGGSGSGS NSSSNKASSP KDDQAPKEEY EGLAPDISDS SGFDDKGSAS  180
NSIQGADDKG FEYTSENYRK TSNEIAAEPE NESYSKKSDE TNVTKHKIPK GAKDKRRETV  240
AEGSTLEECK YYATPGGCKF GKACKNLHRE GKEGKPEAEK IDLNFLGLPL RPGEKECLFY  300
MRTGSCKYSI NCKFHHPDPS NVSSKEPVLE HENSDTPQEN VQAPSQTSVP IWPNQRSMNE  360
QHVPFVAPAQ QYNAGMMPPQ GVYPSPDWSG YHQVPLNPYY PPGVPFQHFP PHLNHQMYST  420
ADIPGHQQDR PVCTYYGRFG VCKYGPACMF NHPFNFGPPV HAAGPPIPGQ YPTPANFTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03232.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY21e-175C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2T7EFS50.0A0A2T7EFS5_9POAL; Uncharacterized protein
STRINGGRMZM2G006493_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-32C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]