PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03313.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 172aa MW: 18616.2 Da PI: 9.0213

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03313.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	73.5	7.4e-23	1	36	135	170
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eiqrika+nPdishreafsaaaknWahfP+ihfgl Zpz_sc03313.1.g00010.1.am.mk 1 DEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 36 59********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.0E-21	1	36	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
DEIQRIKAGN PDISHREAFS AAAKNWAHFP HIHFGLMPDH HGLKKTNLLP QEYQRKDGLL 60 KEGLYTAAAA AAAAANMGAA TGLHCLETRP LSLWCPKAAG CCAFAPTRSL LESIRPAAST 120 YPVHQSKHAT RLASSGRSPC PPPLRPDSKR YDLTDIAPGV VPFFGRSSEQ IE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03313.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091994	2e-73	FP091994.1 Phyllostachys edulis cDNA clone: bphyem110b24, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	8e-29	YABBY family protein