PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03328.1.g00040.1.es.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 782aa    MW: 89479.7 Da    PI: 7.0769
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03328.1.g00040.1.es.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.6e-2354140290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                      Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++
  Zpz_sc03328.1.g00040.1.es.mkhc  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIR 130
                                     7********************9*******************99988..9999*************************** PP

                            FAR1  81 leleHnHela 90 
                                     ++ eHnH+la
  Zpz_sc03328.1.g00040.1.es.mkhc 131 FVPEHNHQLA 140
                                     ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105512.7E-33262355IPR018289MULE transposase domain
PROSITE profilePS5096610.064540578IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-7547575IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-7553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MEGTQVSQEQ RLQIRDNGEA AEKAGDYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPEHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HQINGLSDMI  180
EGDVSENPEY TIRDCYNQVS MQGITIIDAG DSQSLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK SRNDYDCFGD AVIFDTTYRT NKYNLICATF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWLFK SFLESMGGRS PRSIFSDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL  360
GALNTSQAFQ NMFMKCMQGS DSEEDLEKSW TEILHEYKLH DNSWLIDLYR FRYKWCSAFN  420
KDTFDGGINS SQWGEVSNNI LNGISDESTS LTRFALLLEK VIKLLRRHES EEDFRCSQTA  480
PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCY ETSSGGNLLR YEITMQGRGS  540
KVWAALDTST MEITCSCRKF ERMGILCSHA LKAFSLQNVD TIPEKYILKR WTKDARRSVY  600
KLGQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES RKIFWDSLET GEKALEVFFE  660
MRDLRTQAAK DANKKEKRKK KPSKGPILKK AKHVPTSSST GRVLAVQTND HPFQSSQEGH  720
GNATIGRPIY YQPYTTTPNQ IFMHPNMHAM PLCTPQCAKG EVEAGLSSLH YGCICNKSNC  780
AL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03328.1.g00040.1.es.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801014.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X2
RefseqXP_025801016.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X4
TrEMBLA0A3L6TDP40.0A0A3L6TDP4_PANMI; Protein FAR1-RELATED SEQUENCE 9-like isoform X2
STRINGPavir.Bb02863.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5