PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03350.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 498aa    MW: 55185.3 Da    PI: 9.8119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03350.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.5e-09107131226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   + + C+++ ++G CkyG  C+F+H+
  Zpz_sc03350.1.g00030.1.am.mk 107 GKPDCSYYVKFGSCKYGMDCRFNHP 131
                                   7899********************8 PP
2zf-CCCH24.93.6e-08158183126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+++ ++G CkyG  C F+H+
  Zpz_sc03350.1.g00030.1.am.mk 158 PGEPDCSYYVKFGSCKYGMDCMFNHP 183
                                   5789*********************8 PP
3zf-CCCH30.65.7e-10225250126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+++ ++G CkyG  C+F+H+
  Zpz_sc03350.1.g00030.1.am.mk 225 PGEPDCSYYVKFGSCKYGMDCRFNHP 250
                                   5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.305105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013105132IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347157185IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5159183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277224252IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5224251IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-7226250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5229253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4230253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLAAEPTASA GIAKKQSMPS ALRKGTTKRN PRAGHGPSKD LTPRPGLAPS TGLPSLLPLH  60
KLCSIGSCKH RMAYSFNHPA KPSVWQSRHA RASEQLVHDS VYPRRPGKPD CSYYVKFGSC  120
KYGMDCRFNH PSKPCGWQGR HTAADEKQER ESVYPRRPGE PDCSYYVKFG SCKYGMDCMF  180
NHPSKPCGWQ GRHTAADEKQ ERESVYPRRP GEPDCSYYSV YPRRPGEPDC SYYVKFGSCK  240
YGMDCRFNHP LHEPMFPVDS PTQKLFGALL DGVIVGGDNL IRWEAPIFSL RPLTCRRPAG  300
TLQGNRRRLR PVRPRVTPSL LGSSFLFYLF ASPTCGARFD VSVARSEKRL VAQLVSRRLL  360
EPMAHHSPCG NEAVADECDL VSECRGVLVS GQQGEASSTA RDRMARRALN FGGYCRLPCP  420
SLPPPSQAIV SSNSSSTSHR PAAEPRLCSR AIRLPSLAAM HCCRVAHRHL VLCCGATARL  480
PSLALSEPRP PLKFTFVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03350.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2234747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-30zinc finger protein 1