PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03363.1.g00060.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 265aa MW: 29897.3 Da PI: 8.2417

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03363.1.g00060.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.2	9.1e-30	36	126	1	87
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++g Zpz_sc03363.1.g00060.1.am.mk 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAG 116 99*************************9666668889************************************** PP -EEEEEE-SS CS B3 78 DfvvFkldgr 87 D+v F++++ Zpz_sc03363.1.g00060.1.am.mk 117 DVVHFERMRG 126 ****7754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.2E-41	30	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.19E-29	33	140	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.19E-28	35	126	No hit	No description
Pfam	PF02362	2.7E-27	36	139	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.69	36	140	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-23	36	141	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAMNHISQEH PQVWPWGVAM YTNLHYHHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLSGDSGE KGLILSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH 120 FERMRGLGIG DRLFIGFRRR GESATTRAVA PPLPAVRVAA AAQSAGEQQP WSPMCYSTSG 180 SYPNSPANSY AYRHSVDHDR SNTPHAGESS AASVPSRRLR LFGVNLDCGP EPEAETPTAM 240 YGSYMQQSPT FPEPNTWSAL QNQSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-51	31	140	3	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-51	31	140	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03363.1.g00060.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827829.1	1e-148	B3 domain-containing protein Os11g0156000-like isoform X1
Swissprot	Q53QI0	1e-118	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A3L6PJV1	1e-146	A0A3L6PJV1_PANMI; Uncharacterized protein
STRING	Sb05g003450.1	1e-142	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	2e-56	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]