PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03374.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 130aa    MW: 14898.1 Da    PI: 8.6087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03374.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-051032223
                                  EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                   Cp Cg++F+  +++++H+   H
  Zpz_sc03374.1.g00010.1.am.mk 10 ACPQCGEVFTKAESMEHHQAIrH 32
                                  6******************9878 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.974937IPR007087Zinc finger, C2H2
PROSITE patternPS000280932IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
RYPRPRELCA CPQCGEVFTK AESMEHHQAI RHAVSELGPE DSGRNIVEII FKSSWQKRDR  60
PICQIERILK VHNAPRTVAR FEAYRDAVRA RCRAVDAASS SVYGNLEELF VTNPRAILPC  120
FVVIYRVLES
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03374.1.g00010.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856071e-101BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691351.11e-83PREDICTED: uncharacterized protein LOC102720423
TrEMBLA0A0E0KM766e-71A0A0E0KM76_ORYPU; Uncharacterized protein
STRINGOPUNC04G00760.19e-72(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-40C2H2-like zinc finger protein