PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03378.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 210aa    MW: 22163.8 Da    PI: 8.4236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03378.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.31.5e-082311845
                                  -SS-EEEEEE-ST...T---EEEEEE-SSST CS
                          WRKY 18 sefprsYYrCtsa...gCpvkkkversaedp 45
                                  s + rsYYrCt +   gCp+k+ v+r+++ +
  Zpz_sc03378.1.g00020.1.am.mk  2 SAHGRSYYRCTWRaeqGCPAKRTVQRNDD-G 31
                                  6789*******988889*********994.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.167128IPR003657WRKY domain
SMARTSM007745.3E-5252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-7250IPR003657WRKY domain
SuperFamilySSF1182904.71E-7349IPR003657WRKY domain
PfamPF031063.2E-8350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSAHGRSYYR CTWRAEQGCP AKRTVQRNDD GNDIGGSPKY TVVYMAEPTC TANDSMEKPV  60
ILETTAVQAA YKKPCGAKNI ATPAAFLPPP AVESAAAAES SVSGPASTTV TTTGTAGSPA  120
TSDVTWSSTA DNNMSSVTCC TTGCWPSTTG GPRCRLCWST RTWTTSQDRS GHRYTSRLAI  180
GRLTVCTCCT SSRSPSSAIS LQLSISILFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03378.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9HC426e-30A0A0A9HC42_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-07WRKY DNA-binding protein 54