PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03473.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 216aa MW: 24325.8 Da PI: 9.996

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03473.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.7	5.4e-28	84	134	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt eLH++F++a+e LGG++kAtPk il++m+ kgLt++hvkSHLQk Zpz_sc03473.1.g00040.1.am.mk 84 PRMRWTAELHRSFLQAIECLGGQDKATPKLILRFMGAKGLTISHVKSHLQK 134 9*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-26	80	134	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.075	80	140	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-22	84	134	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	85	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRWLESLDQC IPFVPFHLFT SHASQYAKSC QEEEAGENRK ASVWFFPLAP AAFSAPGCLR 60 VQASEMGSGG RNGAVRRYNR SKEPRMRWTA ELHRSFLQAI ECLGGQDKAT PKLILRFMGA 120 KGLTISHVKS HLQKREVWTV WRRKRAEMGT EASYKGMQGS QGISEMRTAA NQYYCMHDYM 180 QAMAMEGRIK QEGLRWQRDA AAAAAADVVS SLQTVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03473.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	2e-50	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652650.1	9e-55	PREDICTED: uncharacterized protein LOC102700890
TrEMBL	J3M0G9	2e-53	J3M0G9_ORYBR; Uncharacterized protein
STRING	Pavir.Gb01051.1.p	2e-55	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	7e-26	G2-like family protein