PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03495.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 177aa    MW: 19914.5 Da    PI: 8.2358
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03495.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1987142256
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   r+++++t+eq+++Le  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa+++
  Zpz_sc03495.1.g00010.1.am.mk  87 RTKRRLTAEQVQALEVSFEEeKRKLEPERKGELARRLGIAPRQVAVWFQNRRARWR 142
                                   77889**************98**********************************9 PP
2HD-ZIP_I/II117.38.6e-3888176289
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    krrl++eqv++LE sFeee+ kLeperK elar+Lg+ prqvavWFqnrRAR++tkqlE+d+++L++a+d+l + +++L 
  Zpz_sc03495.1.g00010.1.am.mk  88 TKRRLTAEQVQALEVSFEEEKrKLEPERKGELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFDRLRAAHDELLAGRDALV 168
                                   69****************9999*********************************************************** PP

                   HD-ZIP_I/II  82 keveeLre 89 
                                   +++++Lr+
  Zpz_sc03495.1.g00010.1.am.mk 169 ADNDRLRS 176
                                   ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.38E-1777146IPR009057Homeodomain-like
PROSITE profilePS5007117.52483144IPR001356Homeobox domain
SMARTSM003891.9E-1685148IPR001356Homeobox domain
PfamPF000461.9E-1687142IPR001356Homeobox domain
CDDcd000869.79E-1587145No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1993143IPR009057Homeodomain-like
PRINTSPR000313.4E-6115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000313.4E-6124140IPR000047Helix-turn-helix motif
PfamPF021837.7E-10144177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDSGRLMISS AAAPFCSAVA GGSQVLQFGG GFRGGTSMVA AVAENGRRKR PFFTPHEALQ  60
LELGLDIMDD VDQLCGFEYE LQGAPERTKR RLTAEQVQAL EVSFEEEKRK LEPERKGELA  120
RRLGIAPRQV AVWFQNRRAR WRTKQLEQDF DRLRAAHDEL LAGRDALVAD NDRLRSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03495.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568504e-84AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804293.11e-67homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC16e-51HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A2T7ERW18e-68A0A2T7ERW1_9POAL; Uncharacterized protein
STRINGPavir.J04192.1.p4e-59(Panicum virgatum)
STRINGMLOC_65462.13e-61(Hordeum vulgare)
STRINGSi030640m7e-60(Setaria italica)
STRINGSb02g023650.17e-60(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-30homeobox 1