PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03594.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 214aa MW: 22624 Da PI: 4.6139

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03594.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.6	1.8e-15	94	175	20	100
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 lPl r+k+i+++d d+k++++ea +l+s a elf+ l+ + a rr+++ + + aav + dfl+d p d Zpz_sc03594.1.g00040.1.sm.mk 94 VLPLGRVKRIIRVDRDIKKVTSEAAMLISAATELFLGSLASGAHTAAAARGRRAVRSAHVRAAVRAhRPTADFLLDCLPVD 174 59***********************************************************97515699*****998 PP NF-YC 100 e 100 e Zpz_sc03594.1.g00040.1.sm.mk 175 E 175 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.12E-15	92	173	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.6E-17	94	158	IPR009072	Histone-fold
Pfam	PF00808	1.6E-13	95	157	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MATAGDPTEE VEHVGEETID AMEPVGEGTT EAMEQVGEET TDAMEQVGEE SRGPTEVSGK 60 KPDAEATEHI GEEPKREEAD AEEEEAGGAS LRPVLPLGRV KRIIRVDRDI KKVTSEAAML 120 ISAATELFLG SLASGAHTAA AARGRRAVRS AHVRAAVRAH RPTADFLLDC LPVDEEAPRA 180 RSTAGSGSGR GGDGEAKSLP RGTRRIDAFF QKVT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03594.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879187.1	2e-45	tropomyosin
TrEMBL	A0A3B6EFW6	9e-45	A0A3B6EFW6_WHEAT; Uncharacterized protein
TrEMBL	A0A446N6Y2	9e-45	A0A446N6Y2_TRITD; Uncharacterized protein
STRING	Pavir.J40808.1.p	4e-47	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28