PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03615.1.g00060.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 256aa MW: 27959.6 Da PI: 10.8332

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03615.1.g00060.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	100	144	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + +++G+g+W+ Ia+ + ++Rt+ q+ s+ qky Zpz_sc03615.1.g00060.1.sm.mkhc 100 PWTEEEHRTFLAGLEKFGKGDWRGIAKNFVTTRTPTQVASHAQKY 144 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.249	93	149	IPR017930	Myb domain
SuperFamily	SSF46689	6.1E-18	94	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-18	96	148	IPR006447	Myb domain, plants
SMART	SM00717	5.6E-12	97	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-12	99	143	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-12	100	144	IPR001005	SANT/Myb domain
CDD	cd00167	5.53E-11	100	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSRAPPARKP RDLRPGVMRL FGVTITPALE VDPSDRDPSP KPPLAAREDV MRKCKSMGNL 60 AAAAAPVDGS GTGDGYHSDD SLMQSSNKRR RAQGRKKSVP WTEEEHRTFL AGLEKFGKGD 120 WRGIAKNFVT TRTPTQVASH AQKYFLRQTN PNKKKRRSSL FDMITGDAEG VSSSNSTTNV 180 GSRIGRDLPP IPPFKPTSKD SSFSKLNLME RWRTPFPLRP IPRGLEGTSS IPATANITTM 240 ASEANMAESS CDGCSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	156	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03615.1.g00060.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961918	6e-85	EU961918.1 Zea mays clone 239020 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001339748.1	1e-100	uncharacterized protein LOC110467540
Swissprot	Q7XC57	2e-40	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1E5VMR7	1e-100	A0A1E5VMR7_9POAL; Transcription factor DIVARICATA
STRING	GRMZM2G108892_P01	1e-99	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5858	36	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-40	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]