PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03643.1.g00060.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 186aa MW: 20694.6 Da PI: 9.6684

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03643.1.g00060.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.4e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp k+ ++ ewyfFs+rd+ky++g r+nra+ sg Zpz_sc03643.1.g00060.1.sm.mk 15 LPPGFRFHPTDEELILHYLRNRAASVPCPV-PIIADVDIYKFDPWDLPCKAVYGDGEWYFFSPRDRKYPNGIRPNRAAGSG 94 79**************************.88***********66666789********************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Zpz_sc03643.1.g00060.1.sm.mk 95 YWKATGTDKPIHDSaTGESVGVKKALVFYKGRPPKGTKTSWIMHEYRL 142 ********9988999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-61	5	147	IPR003441	NAC domain
PROSITE profile	PS51005	55.444	15	170	IPR003441	NAC domain
Pfam	PF02365	7.2E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEETMVSTQA AAPLLPPGFR FHPTDEELIL HYLRNRAASV PCPVPIIADV DIYKFDPWDL 60 PCKAVYGDGE WYFFSPRDRK YPNGIRPNRA AGSGYWKATG TDKPIHDSAT GESVGVKKAL 120 VFYKGRPPKG TKTSWIMHEY RLAAEDPLAA AAAYRPPVKF RNASMRVHAR APSASVSVSV 180 SDWRTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-64	15	142	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03643.1.g00060.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098909	1e-159	FP098909.1 Phyllostachys edulis cDNA clone: bphyem117n24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161118.1	3e-98	protein ATAF2-like
Swissprot	Q8H4S4	3e-75	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A287H7F2	2e-98	A0A287H7F2_HORVV; Uncharacterized protein
TrEMBL	A0A287H7P6	5e-98	A0A287H7P6_HORVV; Uncharacterized protein
STRING	Traes_2BS_924D34AA1.1	2e-96	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	4e-70	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]