PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03660.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 367aa    MW: 39484.6 Da    PI: 5.1773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03660.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.7e-112575446
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                                  W t E++ll++av+++G+ +W+++a +++         g+t+ +c++r++ 
  Zpz_sc03660.1.g00040.1.sm.mk 25 WGTLEELLLACAVTRHGTSSWDSVAMEVQtrsplaarPGLTPHSCRLRFRY 75
                                  9999********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-52077IPR009057Homeodomain-like
SMARTSM007177.7E-52179IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-52179IPR009057Homeodomain-like
PfamPF002491.8E-92575IPR001005SANT/Myb domain
PROSITE profilePS500906.2372577IPR017877Myb-like domain
CDDcd001677.10E-62576No hitNo description
SuperFamilySSF473703.79E-7240343IPR001487Bromodomain
PfamPF004393.4E-5278341IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-5278343IPR001487Bromodomain
CDDcd043691.32E-6280345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGDGSDGTDM SPESEAAAEK GGEIWGTLEE LLLACAVTRH GTSSWDSVAM EVQTRSPLAA  60
RPGLTPHSCR LRFRYLHRRF SNVGAAGEEE VGDGNGDDPD ASAAEGWVDE LRRLRVAELR  120
RDVERCDLSI GTLQSKVKRL REERARSLSG AAKPDAASGN DRLSGEEPGR SCRESNSSDL  180
KPPKHPGAVK EEEVAKQEAS GESAAASKES SEVRSTASLC RRRRSSGKTS GNEEEEAAST  240
PRPLPAQSTP PSALLDAVAA KLGPVMERLR EHESEEGAAY RGMIRRHVDL ETVRTKLEAT  300
TASRADDDDC YPASEFYRDL LLLCTNAVVF FPRSEPEHAA AVEARGEAGA CRYCCAGART  360
GASAGWR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03660.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462574.21e-146uncharacterized protein LOC8055879
TrEMBLA0A3L6QU721e-151A0A3L6QU72_PANMI; Uncharacterized protein
STRINGPavir.Ba01707.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-25DNA-binding bromodomain-containing protein