PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03665.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 342aa    MW: 38247.5 Da    PI: 11.8017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03665.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-062683081554
                                   HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                           HLH  15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 
                                   +i + +++L+ llP +s + +s+  s    L++++ YIksL
  Zpz_sc03665.1.g00020.1.am.mk 268 EISELISKLQALLPASSrRRGSGQASTTKLLKETCSYIKSL 308
                                   68999**********555999999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.835253308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-6267330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-6268324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW  60
ATRPPQAAAV VPVPRSIERA NHAYNHQLLE RERARAVSKL YRPARECRGR VSFSRSRAPP  120
PEQSPAPREH VRSREGRSRR TLPPRCPVGG LYVTRPTWQR RRGSTSTPRD WRAFGRRGGQ  180
LDVTLIGAYI VVLYCCTPLP FCLPHNTLLQ PSKKSDLERL TGPLFPPRTL LPVRERDHSL  240
SAAGEAKHDE TSRMSGRRSS RGNISDEEIS ELISKLQALL PASSRRRGSG QASTTKLLKE  300
TCSYIKSLHR EVDDLSDRLS DLMSTMDHNS PGAEIIRSIL RS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03665.1.g00020.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9758596e-97EU975859.1 Zea mays clone 503296 DNA binding protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3398934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-12bHLH family protein