PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03722.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 158aa    MW: 16855.8 Da    PI: 7.5996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03722.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-081242448
                                  HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                                  W++Ia++++  Rt++++k++w+++l
  Zpz_sc03722.1.g00060.1.sm.mk  1 WAAIASYLP-QRTDNDIKNYWNTHL 24
                                  *********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-12131IPR009057Homeodomain-like
CDDcd001671.18E-5122No hitNo description
PROSITE profilePS5129416.243128IPR017930Myb domain
SuperFamilySSF466893.51E-7131IPR009057Homeodomain-like
PfamPF002491.8E-6124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
WAAIASYLPQ RTDNDIKNYW NTHLKKKLKK HQAIGAIFAS PPPSDLSSTA SPAAGAGAGH  60
VDPGMITNPF TDNYTRPTCS NPGDVTQLIT RRSPFAASGS SLDAESSSSS SYASSMDNIS  120
KLLDGFMNST TPRNDDGADI KPSVTEVNPL LSFVLKYM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03722.1.g00060.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283081e-43KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808268.14e-41transcription factor MYB30-like
TrEMBLA0A1E5VWG16e-51A0A1E5VWG1_9POAL; Myb-related protein 306
STRINGSi026651m9e-38(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.25e-15myb domain protein 60