PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03817.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 159aa    MW: 16561.3 Da    PI: 7.8047
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03817.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.83e-12107150247
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                                   fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++
  Zpz_sc03817.1.g00040.1.am.mk 107 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQD 150
                                   9*************9976665..999************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-9107150IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSTASDPSHL SGGSSQSSPT SSDSSSPSSG AAELAATNLE QVVLTSAAED EADVAPKSPR  60
GIVTGLAATV LPKSSHHGIG AAASLPDPKD GPHPDMHFGA EEHAYVFYNR YAEHVGFSVR  120
RSYKKRKRGV IVSRIFVCSR EGVSDRAKQD GIAAVSAIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03817.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460729.22e-42protein FAR1-RELATED SEQUENCE 5
RefseqXP_025804639.12e-42protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025804640.12e-42protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1E5WBG31e-41A0A1E5WBG3_9POAL; Uncharacterized protein
TrEMBLA0A3L6TC194e-41A0A3L6TC19_PANMI; Protein FAR1-RELATED SEQUENCE 7-like
STRINGPavir.Ba00914.1.p8e-42(Panicum virgatum)
STRINGSb02g033910.18e-42(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.19e-09FAR1-related sequence 12