PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03844.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 505aa    MW: 54521.1 Da    PI: 9.3784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03844.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13181231255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++ h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zpz_sc03844.1.g00010.1.am.mk 181 KMLHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 231
                                   57799***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-13177235No hitNo description
PROSITE profilePS5088815.046179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-17181253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12181243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11185236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSPGWQFIEC PLPCCIGAVT LLRPAAASFH NTTGAGARWL RPQSVYRHTR RSRSSRQAYV  60
LLRRAPHFRP MGDGPCELLV DGRCDRLRHV SDAEDLFSIL RTWEECTNGV PGGASAAESA  120
SAFRQTCTGG PVAAVGRPST TGSSRRRSSV ADEDKVGGAP MQKKQKGAAP PALDDDDGVA  180
KMLHIAVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL QQVLRLLEAK  240
KDRKAYADQV LSPRPGAGAS PRPLVKSTPP ISPRLAVPIS PRTPSRPGSP YNLPSCGAGG  300
RLPHPAAAAY MMATSPAVTP TPTSSSWCSS CNHSWHDYQQ QNYPPQPQYL PTLDSIVTEL  360
VAHASASRPA LVPDVKVEFA GPNLVLKTVS HRAPGQALKI IAALESLSLE ILHVSVSTVD  420
ETMVHSFTIK IGIECELSAE ELVQEIQRTF SFYPRQPSPL AAREASSSQP SQPPSLSLPA  480
SGLPHPNPSY KPGIQRSLPE NPSHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144165RRRSSVADEDKVGGAPMQKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03844.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615852e-76BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
GenBankKJ7268672e-76KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-154transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-155A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Ab01030.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-36bHLH family protein