PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03981.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 130aa    MW: 13572.9 Da    PI: 4.4937
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03981.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix378.7e-1295130136
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 
                                   rW+++e+laLi++r+em+ ++r++ lk+plWe+v++
  Zpz_sc03981.1.g00060.1.sm.mk  95 RWPREETLALIRIRSEMDAAFRNAPLKAPLWEDVAR 130
                                   8*********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MLHHHGGARF PYAAPGTTDA VQFSFPPPPT DPESFTTIPQ PPAPAETSVF AELPFAGSGS  60
GVVAASNLHE DDDTPADFGV SGTGASGASG SGSTRWPREE TLALIRIRSE MDAAFRNAPL  120
KAPLWEDVAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03981.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548723e-38BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds.
GenBankBT0677673e-38BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.12e-25trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.12e-25trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0A9DG781e-30A0A0A9DG78_ARUDO; Uncharacterized protein
STRINGSi016578m9e-25(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152231218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.14e-14GT-2-like 1