PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04010.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 430aa    MW: 45447.2 Da    PI: 7.746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04010.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13130181155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+ +P++   + ++ + a+i   A++Y+k+L+
  Zpz_sc04010.1.g00050.1.am.mk 130 QRMSHIAVERNRRKQMNEYLAVLRSAMPPS---YVQRGDQASIIGGAINYVKELE 181
                                   79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-13128185No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14128185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-17129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MALEAVVSAE GLFGCWSMAA SGGGGWSWNH EHGDGFMEGP VGLEGGVSAS ATWDGGASSS  60
VLMPGVQKPA GNSAAPPLAH NGGRGGNAPA GAEFSKEGAA AATAISPVSG VRRKRRMARS  120
AKNREEVESQ RMSHIAVERN RRKQMNEYLA VLRSAMPPSY VQRGDQASII GGAINYVKEL  180
EQLVQTLEAR KHTRNNTPSS PGVDAAAATP FAGFFTFPQY SISAAGVSST AANMPRPVDV  240
VDGNANDADG NDTAAGSRKS SVADIEVTMV ETHANLKVLS RRRPRQLLCV VAGLQGHRLT  300
VLHLNVTSAG PMALYSLSLK VPPFAVAPAF RSFPQQRSLI QTSFQMLTQG RVARGHNPKN  360
IHFCVLIYDL MIVLLPLTHL FDGTAARVQV EDDCQLSSAD DIAAAVHRIV EALEHEQKDL  420
HDGGGELGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130141RMSHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04010.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076262e-66AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588612e-66HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973718.14e-88transcription factor bHLH94
RefseqXP_020156069.11e-88transcription factor bHLH94-like
TrEMBLA0A0A9VPC81e-110A0A0A9VPC8_ARUDO; Uncharacterized protein
STRINGTRIUR3_09788-P11e-90(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-53bHLH family protein