PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04044.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 221aa MW: 24003.4 Da PI: 8.397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04044.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	2	18	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka+i + A+ YI +Lq Zpz_sc04044.1.g00010.1.am.mk 2 DKASIIRDAIAYIEKLQ 18 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-6	1	38	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDKASIIRDA IAYIEKLQEE ERRMLAEIAA LESSTAAVEA EDAGGLAADD ADSFPCPKKP 60 RRAPPADDGA RCAPSAPPVQ ILEEMRSCDA QVQVSEAGER VAVVSVRCSR GRDAVSKVCR 120 ALEPLRLRIV TATVAAVGDT VVHTIATSQL VSLPSTGTPH RRHLPAMRCR RSAGEAGREI 180 EERRQEEQRG EVMRQVHPLV ATHANRALAR THTAPKRRVL L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04044.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823076.1	5e-48	transcription factor bHLH35-like isoform X1
TrEMBL	A0A0A9IMR0	3e-50	A0A0A9IMR0_ARUDO; Uncharacterized protein
STRING	Pavir.Gb02374.1.p	2e-46	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.3	4e-15	bHLH family protein