PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04050.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 305aa    MW: 32898.3 Da    PI: 8.4979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04050.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.52.1e-17116162455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      + +Ka+iL +A+eY+ksLq
  Zpz_sc04050.1.g00030.1.am.mk 116 VHNLSERRRRDRINEKMRALQELVPHC-----NRTDKASILDEAIEYLKSLQ 162
                                   6*************************8.....69*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.30E-18107166No hitNo description
SuperFamilySSF474594.32E-21110176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-21116171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-18118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGIKYLGAAG CKKWILAMDG GTGSTPPSQK RPLPEVRSSF CGSNLVAATP TPRVGHDDAA  60
LALPPGASTS GSSALLKRSR DEVDSPGGED AEFEAVDETR TSRRPASKRR TRAAEVHNLS  120
ERRRRDRINE KMRALQELVP HCNRTDKASI LDEAIEYLKS LQLQVQIMWM TAGMAPMMLP  180
GGHQQLTGMC LNSSCMPPAT QVLTQMQRVP PFMNIPLRNQ MPRVSSAATN VPNVANQDQK  240
NNIAGPRNRF LHPNDAPAAT PEVPSLFGYG SQMAHQNEIQ ELLATIAAPA LEAEPPSSSD  300
GTGTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107124KRRTRAAEVHNLSERRRR
2120125ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04050.1.g00030.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955437.11e-126transcription factor PIF4
SwissprotQ10CH56e-78PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A368PUY61e-125A0A368PUY6_SETIT; Uncharacterized protein
TrEMBLK3ZTU81e-125K3ZTU8_SETIT; Uncharacterized protein
STRINGPavir.Ba03888.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.12e-34phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]