PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04052.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 119aa    MW: 14002.1 Da    PI: 7.7215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04052.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.84.6e-1559107249
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k 49 
                                   ppGfrF Pt+eel+ +yL+++++g + ++e++i+ vdiy+++P+dL+ +
  Zpz_sc04052.1.g00020.1.am.mk  59 PPGFRFYPTEEELLGFYLRHRLAGMRPDVERFIPVVDIYSYHPRDLQcN 107
                                   9****************************999**************843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-1556106IPR003441NAC domain
PROSITE profilePS5100517.18458119IPR003441NAC domain
PfamPF023658.7E-759105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDAPTSAMAV QRMQLLQNFF TLLWELLSRH QHHRPLYKYV QGMRLNMETT GGGVDPIFPP  60
GFRFYPTEEE LLGFYLRHRL AGMRPDVERF IPVVDIYSYH PRDLQCNQLD LQASNRSMS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04052.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1122091e-40AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBankAK1062771e-40AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBankAK1099391e-40AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
GenBankAP0149671e-40AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-40CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6PK974e-25A0A3L6PK97_PANMI; NAC domain-containing protein 90-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.19e-12NAC domain containing protein 71